qTeller: Rice
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Davidson, Rebecca M, Malali Gowda, Gaurav Moghe, Haining Lin, Brieanne Vaillancourt, Shin-Han Shiu, Ning Jiang, and C Robin Buell. "Comparative Transcriptomics of Three Poaceae Species Reveals Patterns of Gene Expression Evolution." The Plant Journal (2012) doi:10.1111/j.1365-313X.2012.05005.x

Zhang, Wenli, Yufeng Wu, James C. Schnable, Zixian Zeng, Michael Freeling, Gregory E. Crawford, and Jiming Jiang. "High-resolution Mapping of Open Chromatin in the Rice Genome." Genome Research 22 (2012): 151-162. doi:10.1101/gr.131342.111

Oono, Youko, Yoshihiro Kawahara, Hiroyuki Kanamori, Hiroshi Mizuno, Harumi Yamagata, Mayu Yamamoto, Satomi Hosokawa, et al. "mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice Under Phosphate Stress." Rice 4 (2012): 50-65. doi:10.1007/s12284-011-9064-0